Publications

Phillip W. Berman, PhDYu B, Fonseca DP, O'Rourke SM, Berman PW. Protease cleavage sites in HIV-1 gp120 recognized by antigen processing enzymes are conserved and located at receptor binding sites. J Virol. 2010 Feb;84(3):1513-26. Epub 2009 Nov 25. View in: PubMed
Phillip W. Berman, PhDPérez-Losada M, Jobes DV, Sinangil F, Crandall KA, Arenas M, Posada D, Berman PW. Phylodynamics of HIV-1 from a phase III AIDS vaccine trial in Bangkok, Thailand. PLoS One. 2011 Mar 10;6(3):e16902. View in: PubMed
Phillip W. Berman, PhDPérez-Losada M, Jobes DV, Sinangil F, Crandall KA, Posada D, Berman PW. Phylodynamics of HIV-1 from a phase-III AIDS vaccine trial in North America. Mol Biol Evol. 2010 Feb;27(2):417-25. Epub 2009 Oct 28. View in: PubMed
Phillip W. Berman, PhD O'Rourke SM, Schweighardt B, Phung P, Fonseca DP, Terry K, Wrin T, Sinangil F, Berman PW. Mutation at a single position in the V2 domain of the HIV-1 envelope protein confers neutralization sensitivity to a highly neutralization-resistant virus. J Virol. 2010 Nov;84(21):11200-9. View in: PubMed
Phillip W. Berman, PhDSmith DH, Winters-Digiacinto P, Mitiku M, O'Rourke S, Sinangil F, Wrin T, Montefiori DC, Berman PW. Comparative immunogenicity of HIV-1 clade C envelope proteins for prime/boost studies. PLoS One. 2010 Aug 11;5(8):e12076. View in: PubMed
Gilad Doitsh, PhDDoitsh G, Cavrois M, Lassen KG, Zepeda O, Yang Z, Santiago ML, Hebbeler AM, Greene WC. Abortive HIV infection mediates CD4 T cell depletion and inflammation in human lymphoid tissue. Cell. 2010 Nov 24;143(5):789-801. View in: PubMed
JJ Miranda, PhDCho US, Corbett KD, Al-Bassam J, Bellizzi JJ, De Wulf P, Espelin CW, Miranda JJ, Simons K, Wei RR, Sorger PK, Harrison SC. Molecular structures and interactions in the yeast kinetochore. Cold Spring Harb Symp Quant Biol. 2010; 75:395-401. View in: PubMed
JJ Miranda, PhDHoldorf MM, Cooper SB, Yamamoto KR, Miranda JJ. Occupancy of chromatin organizers in the Epstein-Barr virus genome. Virology. 2011 Jun 20; 415(1):1-5. View in: PubMed
JJ Miranda, PhDMartinez SR, Miranda JL. CTCF terminal segments are unstructured. Protein Sci. 2010 May; 19(5):1110-6. View in: PubMed
JJ Miranda, PhDCampbell AE, Martinez SR, Miranda JJ. Molecular architecture of CTCFL. Biochem Biophys Res Commun. 2010 Jun 4; 396(3):648-50. View in: PubMed